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calculating time complexity

$30-250 AUD

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已发布超过 6 年前

$30-250 AUD

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First task Calculate the time complexity and space complexity for the following Alignment Methods State the time complexity with prove Mummer,RTD,kmacs,ACS,Spaced,cvt,Jspecies tetra,Jspecies ANIm,Jspecies ANIb,ANI,Pyani ANIm,Pyani ANIb,Pyani Tetra,Blast,Kmer,Cophylog,Kr,gram Second Task 1. Get 10 genomes from different species (known taxonomy on NCBI) 2. Average 2 ANI distances between each 2 species 3. Compare all others (Methods) to that Third Task obtain the phylogenetic tree using alignment methods. perform all popular alignment techniques, then vote for the most commonly generated tree, this tree can then be used as a reference to compare other methods. pyani --> [login to view URL] mummer --> [login to view URL] blast --> ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ kmacs -->[login to view URL] co-phylog-->[login to view URL] Co-phylog: a bioinformatics tool for Phylogenetic inference | Phylogenomics Creates a micro-alignment in a sequence using the context of an object. Co-phylog is a phylogenomic approach that takes advantage of unassembled next-generation sequencing (NGS) data from complete genomes. This application has similar computing efficiency with ‘word frequencies’ based on alignme... [login to view URL] spaced words -->[login to view URL] JAN 26TH, 3:03AM ffp --> [login to view URL] kmacs -->[login to view URL] JSpecies not available as source code CVT -->[login to view URL] kmer -->[login to view URL]
项目 ID: 16222329

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AUSTRALIA的国旗
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